Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53100.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
AMY55842.1
35 kDa protein.
  
     0.717
AMY54908.1
Hypothetical protein.
  
     0.702
AMY56050.1
Hypothetical protein.
  
     0.684
AMY55047.1
Hypothetical protein.
  
     0.670
AMY51699.1
Universal stress protein.
     
 0.659
AMY54438.1
Hypothetical protein.
  
     0.633
AMY55239.1
3'-5' exoribonuclease; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.594
AMY52755.1
Hypothetical protein.
  
     0.578
acnR
HTH-type transcriptional repressor AcnR.
  
     0.576
AMY53101.1
Hypothetical protein.
       0.549
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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