Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53134.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
AMY55523.1
Hypothetical protein.
  
 
 0.908
AMY53318.1
Hypothetical protein.
 
 
 0.683
todS
Sensor histidine kinase TodS.
  
 
 0.672
AMY53319.1
Hypothetical protein.
 
 
 0.624
AMY54593.1
Hypothetical protein.
  
     0.609
AMY54848.1
Hypothetical protein.
  
     0.591
AMY53184.1
Hypothetical protein.
  
     0.534
AMY53141.1
Hypothetical protein.
  
     0.528
AMY51416.1
Hypothetical protein.
  
    0.509
AMY53135.1
Hypothetical protein.
       0.483
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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