Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53152.1Hypothetical protein. (800 aa)    
Predicted Functional Partners:
mviN
Putative peptidoglycan biosynthesis protein MviN.
 
   
 0.950
mutT4
Putative mutator protein MutT4; Belongs to the Nudix hydrolase family.
  
  
 0.922
AMY53155.1
Hypothetical protein.
 
    0.818
AMY53346.1
Putative membrane protein.
  
     0.764
rseA
Anti-sigma-E factor RseA.
  
     0.763
sigM
ECF RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
       0.760
AMY54356.1
Hypothetical protein.
  
     0.756
AMY53900.1
Hypothetical protein.
  
   
 0.752
AMY55828.1
Hypothetical protein.
  
     0.751
AMY53923.1
Hypothetical protein.
  
     0.749
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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