Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trxB_1Thioredoxin reductase. (355 aa)    
Predicted Functional Partners:
trxA_2
Thioredoxin; Belongs to the thioredoxin family.
 
 
 0.994
csd_2
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
  0.918
trxB_2
Thioredoxin reductase.
 
  
0.906
xdhA_1
Xanthine dehydrogenase molybdenum-binding subunit.
    
  0.901
AMY55804.1
Alkyl hydroperoxide reductase subunit C.
  
 
 0.810
trxC
Putative thioredoxin-2; Belongs to the thioredoxin family.
  
 
 0.729
AMY53155.1
Hypothetical protein.
       0.699
AMY54892.1
Thioredoxin C-1.
  
 
 0.677
mtr
Mycothione reductase.
 
 
 0.596
lytC_1
N-acetylmuramoyl-L-alanine amidase LytC.
  
  
 0.554
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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