Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pbpA_2Penicillin-binding protein A. (494 aa)    
Predicted Functional Partners:
rodA_1
Putative FtsW-like protein; Belongs to the SEDS family.
 
 0.999
dac
D-alanyl-D-alanine carboxypeptidase.
     
 0.960
dacF
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
 
 
 0.957
ftsW
Putative lipid II flippase FtsW; Belongs to the SEDS family.
 0.954
pknA_1
Serine/threonine-protein kinase PknA.
  
  
 0.953
pknB
Serine/threonine-protein kinase PknB.
  
  
 0.952
fhaB
FHA domain-containing protein FhaB.
 
   
 0.943
pbpB
Penicillin-binding protein PbpB.
  
  
0.943
pstP
PP2C-family Ser/Thr phosphatase.
  
  
 0.935
pbpG
Penicillin-binding protein 2D.
 
 
 
 0.857
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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