Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gltB_1Glutamate synthase [NADPH] large chain. (1573 aa)    
Predicted Functional Partners:
fprB_1
Putative ferredoxin/ferredoxin--NADP reductase.
 
 
 0.999
gltD_1
Glutamate synthase [NADPH] small chain.
 0.999
fprA
NADPH-ferredoxin reductase FprA.
  
 
 0.999
fprB_2
Putative ferredoxin/ferredoxin--NADP reductase.
 
 
 0.999
gltB_2
Glutamate synthase [NADPH] large chain.
 
0.999
gltD_2
Glutamate synthase [NADPH] small chain.
 0.999
gdhA
NAD(P)-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.983
glmS
Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.982
glnA_1
Glutamine synthetase.
  
 
 0.980
carB_1
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
 
 0.979
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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