Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pspB_1Putative phosphoserine phosphatase 2. (204 aa)    
Predicted Functional Partners:
gltC_2
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
       0.781
AMY53200.1
Hypothetical protein.
       0.619
AMY52985.1
Hypothetical protein.
  
    0.575
ynfM_2
Inner membrane transport protein YnfM.
       0.569
cobIJ
Cobalamin biosynthesis protein CobIJ; Belongs to the precorrin methyltransferase family.
  
  
 0.457
AMY53464.1
Hypothetical protein.
  
     0.445
AMY54260.1
Hypothetical protein.
  
    0.441
htpX
Hypothetical protein; Protease HtpX homolog; Belongs to the peptidase M48B family.
  
    0.428
AMY55935.1
Hypothetical protein.
  
  
 0.423
cobQ_2
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.419
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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