Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53211.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
       0.776
ccpA_2
Catabolite control protein A.
 
     0.607
AMY54367.1
Hypothetical protein.
  
   
 0.504
AMY55580.1
Hypothetical protein.
  
    0.489
AMY52631.1
Hypothetical protein.
  
     0.479
ydaF_3
Putative ribosomal N-acetyltransferase YdaF.
       0.457
AMY54482.1
Hypothetical protein.
  
   
 0.451
fbiB_2
Coenzyme F420:L-glutamate ligase.
  
    0.435
sotB
Sugar efflux transporter B.
       0.410
AMY53855.1
Hypothetical protein.
     
 0.407
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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