Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccpA_2Catabolite control protein A. (348 aa)    
Predicted Functional Partners:
rbsR_3
Ribose operon repressor.
  
     0.773
degA_1
HTH-type transcriptional regulator DegA.
  
     0.773
ccpA_1
Catabolite control protein A.
  
     0.772
gltB_1
Glutamate synthase [NADPH] large chain.
    
 
 0.736
gltB_2
Glutamate synthase [NADPH] large chain.
    
 
 0.736
sotB
Sugar efflux transporter B.
       0.618
AMY53211.1
Hypothetical protein.
 
     0.607
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
       0.551
ptsH
Phosphocarrier protein HPr.
   
 
 0.471
fruA
PTS system fructose-specific EIIABC component.
     
 0.466
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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