Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
argOArginine exporter protein ArgO. (205 aa)    
Predicted Functional Partners:
AMY53240.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.978
AMY53237.1
Hypothetical protein.
       0.547
AMY53238.1
Hypothetical protein.
       0.547
AMY51725.1
Hypothetical protein.
  
   
 0.454
rhtB_1
Homoserine/homoserine lactone efflux protein.
  
   
 0.430
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
      
 0.430
pitA
Low-affinity inorganic phosphate transporter 1.
      
 0.406
AMY52401.1
Hypothetical protein.
      
 0.404
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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