gabD_1 protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gabD_1

Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family. (511 aa)

Predicted Functional Partners:

AMY53558.1

0.865

lat

0.780

AMY53244.1

0.773

gabT_1

0.726

gadA

0.673

gabR

0.621

kgd

0.620

lrp_1

0.552

fumC

0.527

acnA

0.515

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY53244.1	gabD_1	A3L23_01899	A3L23_01898	Hypothetical protein.	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	0.773
AMY53244.1	lat	A3L23_01899	A3L23_01897	Hypothetical protein.	Putative L-lysine-epsilon aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.540
AMY53558.1	gabD_1	A3L23_02216	A3L23_01898	Hypothetical protein.	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	0.865
acnA	fumC	A3L23_04322	A3L23_03016	Aconitate hydratase.	Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.985
acnA	gabD_1	A3L23_04322	A3L23_01898	Aconitate hydratase.	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	0.515
acnA	kgd	A3L23_04322	A3L23_03146	Aconitate hydratase.	Multifunctional 2-oxoglutarate metabolism enzyme.	0.986
fumC	acnA	A3L23_03016	A3L23_04322	Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Aconitate hydratase.	0.985
fumC	gabD_1	A3L23_03016	A3L23_01898	Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	0.527
fumC	kgd	A3L23_03016	A3L23_03146	Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Multifunctional 2-oxoglutarate metabolism enzyme.	0.966
gabD_1	AMY53244.1	A3L23_01898	A3L23_01899	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Hypothetical protein.	0.773
gabD_1	AMY53558.1	A3L23_01898	A3L23_02216	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Hypothetical protein.	0.865
gabD_1	acnA	A3L23_01898	A3L23_04322	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Aconitate hydratase.	0.515
gabD_1	fumC	A3L23_01898	A3L23_03016	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.527
gabD_1	gabR	A3L23_01898	A3L23_03290	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	HTH-type transcriptional regulatory protein GabR.	0.621
gabD_1	gabT_1	A3L23_01898	A3L23_00331	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.726
gabD_1	gadA	A3L23_01898	A3L23_01795	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase alpha; Belongs to the group II decarboxylase family.	0.673
gabD_1	kgd	A3L23_01898	A3L23_03146	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Multifunctional 2-oxoglutarate metabolism enzyme.	0.620
gabD_1	lat	A3L23_01898	A3L23_01897	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Putative L-lysine-epsilon aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.780
gabD_1	lrp_1	A3L23_01898	A3L23_00093	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	Leucine-responsive regulatory protein.	0.552
gabR	gabD_1	A3L23_03290	A3L23_01898	HTH-type transcriptional regulatory protein GabR.	Succinate-semialdehyde dehydrogenase [NADP(+)]; Belongs to the aldehyde dehydrogenase family.	0.621

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About