Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mshD_3Mycothiol acetyltransferase. (170 aa)    
Predicted Functional Partners:
AMY53247.1
Hypothetical protein.
       0.686
ctpA
Cation-transporting P-type ATPase A.
  
    0.686
rppH
RNA pyrophosphohydrolase.
 
    0.650
AMY53249.1
Hypothetical protein.
       0.563
menG_1
Demethylmenaquinone methyltransferase.
       0.563
pds
15-cis-phytoene desaturase.
       0.563
AMY53245.1
Hypothetical protein.
       0.544
ysnE
Putative N-acetyltransferase YsnE.
     
 0.501
acuC
Acetoin utilization protein AcuC.
  
  
 0.497
kstR2_1
HTH-type transcriptional repressor KstR2.
  
 
 0.482
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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