Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phrDeoxyribodipyrimidine photo-lyase. (406 aa)    
Predicted Functional Partners:
phrB
(6-4) photolyase.
 
   
 0.688
AMY54658.1
Hypothetical protein.
 
     0.627
AMY55546.1
Hypothetical protein.
 
  
 0.553
AMY54980.1
Hypothetical protein.
  
 
 0.472
sodA
Mn superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.457
AMY52410.1
Putative multidrug export ATP-binding/permease protein.
  
 
 0.451
todS
Sensor histidine kinase TodS.
  
 
 0.450
AMY55164.1
Hypothetical protein.
 
     0.445
AMY52409.1
Putative ABC transporter ATP-binding protein.
  
 
 0.444
AMY53855.1
Hypothetical protein.
  
 
   0.426
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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