Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53295.1Hypothetical protein. (127 aa)    
Predicted Functional Partners:
AMY53900.1
Hypothetical protein.
  
     0.752
rraA
Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.741
AMY55382.1
Hypothetical protein.
  
     0.710
AMY55789.1
Hypothetical protein.
  
 
   0.702
AMY55016.1
Hypothetical protein.
  
 
   0.693
AMY52121.1
Hypothetical protein.
  
     0.692
lpqE
Putative lipoprotein LpqE.
  
 
   0.683
eccE1
ESX-1 secretion system protein EccE1.
  
     0.678
AMY54104.1
Hypothetical protein.
  
     0.671
AMY53899.1
Hypothetical protein.
  
     0.656
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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