Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY53302.1Putative HTH-type transcriptional regulator. (161 aa)    
Predicted Functional Partners:
bmr3_2
Multidrug resistance protein 3.
 
  
 0.899
rpfA
Resuscitation-promoting factor RpfA.
  
     0.561
AMY55768.1
Putative RNA methyltransferase/cg2084; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
     
 0.510
rpfE
Resuscitation-promoting factor RpfE.
  
     0.495
AMY53835.1
Hypothetical protein.
  
     0.490
AMY53303.1
Hypothetical protein.
       0.489
AMY55224.1
Hypothetical protein.
  
  
 0.468
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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