Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53307.1Hypothetical protein. (380 aa)    
Predicted Functional Partners:
AMY53308.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.766
hhaIM
Modification methylase HhaI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
    0.592
AMY53309.1
Hypothetical protein.
       0.585
AMY53311.1
Hypothetical protein.
 
     0.533
maoII
Copper methylamine oxidase.
  
     0.501
pfkB
ATP-dependent 6-phosphofructokinase isozyme 2; Belongs to the carbohydrate kinase PfkB family.
  
    0.472
AMY53312.1
Hypothetical protein.
       0.447
AMY53313.1
Hypothetical protein.
       0.447
yhdG_6
Putative amino acid permease YhdG.
  
     0.411
lacC
Tagatose-6-phosphate kinase.
   
    0.401
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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