Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53309.1Hypothetical protein. (291 aa)    
Predicted Functional Partners:
hhaIM
Modification methylase HhaI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
       0.786
AMY53308.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.701
AMY53307.1
Hypothetical protein.
       0.585
AMY53311.1
Hypothetical protein.
       0.578
AMY53312.1
Hypothetical protein.
       0.578
AMY53313.1
Hypothetical protein.
       0.578
AMY53314.1
Hypothetical protein.
       0.468
AMY53315.1
Hypothetical protein.
       0.449
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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