Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hhaIMModification methylase HhaI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (396 aa)    
Predicted Functional Partners:
ydiP
Putative BsuMI modification methylase subunit YdiP; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
  
 
0.927
metK
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.919
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
 0.905
AMY53309.1
Hypothetical protein.
       0.786
AMY53308.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.702
AMY53311.1
Hypothetical protein.
 
     0.638
AMY53312.1
Hypothetical protein.
 
     0.628
AMY53307.1
Hypothetical protein.
  
    0.592
AMY53313.1
Hypothetical protein.
       0.578
AMY54841.1
Hypothetical protein.
 
   
 0.578
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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