Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53321.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
lprB
Putative lipoprotein LprB.
  
     0.760
AMY54321.1
Hypothetical protein.
  
     0.750
AMY52885.1
Hypothetical protein.
  
     0.706
AMY55093.1
Hypothetical protein.
  
     0.685
AMY54394.1
Hypothetical protein.
  
     0.663
AMY53122.1
Hypothetical protein.
  
     0.651
AMY52083.1
Hypothetical protein.
  
     0.639
AMY55715.1
Putative lipoprotein.
  
     0.626
AMY54101.1
Hypothetical protein.
  
     0.616
AMY55628.1
Hypothetical protein.
  
     0.600
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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