Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53330.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
AMY53328.1
Hypothetical protein.
 
     0.887
pspE
Thiosulfate sulfurtransferase PspE.
  
    0.872
glpQ1
Putative glycerophosphoryl diester phosphodiesterase 1.
       0.871
menG_5
Demethylmenaquinone methyltransferase.
  
     0.650
AMY51974.1
Intracellular chorismate mutase.
  
     0.527
leuS
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.520
AMY56127.1
Hypothetical protein.
  
     0.511
fgd1_2
F420-dependent glucose-6-phosphate dehydrogenase.
       0.504
AMY53141.1
Hypothetical protein.
  
     0.457
AMY52748.1
Hypothetical protein.
  
     0.446
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.