Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pspB_2Putative phosphoserine phosphatase 2; Belongs to the phosphoglycerate mutase family. (220 aa)    
Predicted Functional Partners:
pheA
Prephenate dehydratase.
     
 0.880
AMY53336.1
Hypothetical protein.
       0.797
AMY53335.1
Hypothetical protein.
       0.719
htpX
Hypothetical protein; Protease HtpX homolog; Belongs to the peptidase M48B family.
  
    0.682
htrA
Putative serine protease HtrA.
  
    0.607
pspA_4
Phosphoserine phosphatase 1.
  
     0.557
AMY53334.1
Hypothetical protein.
  
    0.543
ywtF
Putative transcriptional regulator YwtF.
 
     0.469
cobIJ
Cobalamin biosynthesis protein CobIJ; Belongs to the precorrin methyltransferase family.
  
  
 0.457
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
      
 0.426
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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