Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tcrY_2Putative sensor histidine kinase TcrY. (471 aa)    
Predicted Functional Partners:
mprA_3
Response regulator MprA.
 
 
 0.973
AMY55523.1
Hypothetical protein.
  
 
 0.912
mtrA
DNA-binding response regulator MtrA.
 
 
 0.858
prrA
Transcriptional regulatory protein PrrA.
 
 
 0.853
regX3_1
Sensory transduction protein regX3.
 
 
 0.852
regX3_2
Sensory transduction protein regX3.
 
 
 0.852
tcrX
Putative transcriptional regulatory protein TcrX.
 
 
 0.849
yycF
Transcriptional regulatory protein YycF.
 
 
 0.846
kdpE_1
KDP operon transcriptional regulatory protein KdpE.
 
 
 0.837
mprA_1
Response regulator MprA.
 
 
 0.833
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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