Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53362.1Hypothetical protein. (728 aa)    
Predicted Functional Partners:
aftB
Terminal beta-(1->2)-arabinofuranosyltransferase.
 
   
 0.563
AMY54394.1
Hypothetical protein.
  
    0.518
glf
UDP-galactopyranose mutase.
     
 0.481
AMY52885.1
Hypothetical protein.
  
     0.478
AMY52758.1
Hypothetical protein.
  
    0.469
AMY53640.1
Hypothetical protein.
  
     0.427
cobM
Precorrin-4 C(11)-methyltransferase; Belongs to the precorrin methyltransferase family.
     
 0.426
AMY53364.1
Hypothetical protein.
       0.423
ylxH
Flagellum site-determining protein YlxH; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
      
 0.418
AMY54606.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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