Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
AMY53374.1Hypothetical protein. (317 aa)    
Predicted Functional Partners:
fbpB_3
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
 
  
 0.945
AMY53373.1
Hypothetical protein.
     
 0.894
fbpB_2
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
 
   
 0.859
aftB
Terminal beta-(1->2)-arabinofuranosyltransferase.
 
   
 0.843
embB
Putative arabinosyltransferase B.
 
 
 0.838
embC_2
Putative arabinosyltransferase C.
 
 
 0.834
embC_1
Putative arabinosyltransferase C.
 
 
 0.833
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
 
   
 0.811
fbpB_1
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
 
   
 0.810
AMY53376.1
Long-chain-fatty-acid--AMP ligase FadD32.
 
   
 0.798
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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