Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53379.1Hypothetical protein. (312 aa)    
Predicted Functional Partners:
AMY53694.1
Hypothetical protein.
  
     0.743
AMY56081.1
Hypothetical protein.
  
     0.731
AMY53382.1
Hypothetical protein.
 
     0.612
AMY53155.1
Hypothetical protein.
  
     0.600
AMY51677.1
Hypothetical protein.
  
     0.558
AMY53325.1
Hypothetical protein.
  
     0.497
AMY53731.1
Hypothetical protein.
  
     0.490
AMY55620.1
Hypothetical protein.
  
     0.481
AMY53711.1
Hypothetical protein.
  
     0.471
AMY53103.1
Hypothetical protein.
 
     0.468
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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