Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53383.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
AMY53384.1
Putative HTH-type transcriptional regulator.
       0.560
embC_1
Putative arabinosyltransferase C.
       0.532
AMY53382.1
Hypothetical protein.
       0.532
ribH2
6,7-dimethyl-8-ribityllumazine synthase 2; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
 
 
 0.523
AMY53642.1
Hypothetical protein.
  
  
 0.510
acdA_7
Acyl-CoA dehydrogenase.
  
   
 0.453
fosB2
Metallothiol transferase FosB 2.
 
    0.443
AMY51455.1
Hypothetical protein.
 
  
 0.432
AMY55528.1
Hypothetical protein.
 
    0.425
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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