Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY53388.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
dprE2
NAD-dependent decaprenylphosphoryl-D-2-keto erythropentose reductase.
 
   
 0.946
dprE1_1
FAD-dependent decaprenylphosphoryl-beta-D-ribofuranose 2-oxidase.
 
   
 0.945
aftA
Arabinofuranosyltransferase AftA.
 
   
 0.878
embC_2
Putative arabinosyltransferase C.
 
    0.761
embC_1
Putative arabinosyltransferase C.
 
    0.758
embB
Putative arabinosyltransferase B.
 
    0.754
AMY53368.1
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
     0.710
AMY55741.1
Alpha-(1->3)-arabinofuranosyltransferase.
  
   
 0.690
AMY55554.1
Putative oxidoreductase.
 
     0.688
aftB
Terminal beta-(1->2)-arabinofuranosyltransferase.
 
  
 0.657
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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