Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY53406.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
glfT1
Galactofuranosyl transferase GlfT1.
 
  
 0.759
tagH
Teichoic acids export ATP-binding protein TagH.
     
 0.687
AMY53409.1
Hypothetical protein.
     
 0.686
prpE
Bis(5'-nucleosyl)-tetraphosphatase PrpE.
   
   0.578
AMY51806.1
Hypothetical protein.
  
 0.524
nicC
6-hydroxynicotinate 3-monooxygenase.
  
 0.524
hpxO
FAD-dependent urate hydroxylase.
  
 0.524
tfdB
2,4-dichlorophenol 6-monooxygenase.
  
 0.524
AMY53221.1
Hypothetical protein; Belongs to the UPF0311 family.
  
 0.524
mhpA
3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase.
  
 0.524
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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