Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csdACysteine desulfurase CsdA. (415 aa)    
Predicted Functional Partners:
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
 
 
 0.964
sufC
Vegetative protein 296.
 
  
 0.925
sufB
FeS cluster assembly protein SufB.
 
 
 0.899
sufD
FeS cluster assembly protein SufD.
 
 
 0.891
AMY53410.1
Hypothetical protein.
       0.751
AMY54310.1
Hypothetical protein.
    
   0.602
AMY51435.1
Putative SufE-like protein.
  
 
 0.596
AMY53409.1
Hypothetical protein.
 
     0.567
AMY55116.1
Hypothetical protein.
  
     0.535
AMY53900.1
Hypothetical protein.
  
   
 0.520
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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