Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
focAPutative formate transporter 1. (270 aa)    
Predicted Functional Partners:
dauA_4
C4-dicarboxylic acid transporter DauA.
  
  
 0.638
mtcA2
Carbonic anhydrase 2.
  
  
 0.622
mtcA1
Beta-carbonic anhydrase 1.
  
  
 0.622
nasF
Uroporphyrinogen-III C-methyltransferase.
     
 0.593
pheT
Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.547
todS
Sensor histidine kinase TodS.
     
 0.493
AMY55848.1
Hypothetical protein.
 
  
 0.480
AMY53335.1
Hypothetical protein.
  
   
 0.463
AMY54545.1
Hypothetical protein.
  
     0.463
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.451
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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