Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53439.1Hypothetical protein. (67 aa)    
Predicted Functional Partners:
AMY55465.1
Hypothetical protein.
  
     0.635
AMY52262.1
Hypothetical protein.
  
     0.583
AMY52661.1
Hypothetical protein.
  
     0.548
AMY53438.1
Hypothetical protein.
       0.525
AMY51717.1
Hypothetical protein.
  
     0.515
ydbD
Putative manganese catalase.
 
     0.514
AMY51713.1
Hypothetical protein.
  
     0.503
AMY54658.1
Hypothetical protein.
  
     0.501
AMY52673.1
Hypothetical protein.
  
     0.439
AMY54051.1
Hypothetical protein.
  
     0.439
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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