Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
acoR_2Acetoin dehydrogenase operon transcriptional activator AcoR. (585 aa)    
Predicted Functional Partners:
mmoX
Methane monooxygenase component A alpha chain.
 
   
 0.860
AMY53447.1
Hypothetical protein.
 
     0.836
mmoY
Methane monooxygenase component A beta chain.
 
     0.829
mmoC
Methane monooxygenase component C.
 
     0.800
AMY54038.1
Hypothetical protein.
 
     0.709
AMY54039.1
Hypothetical protein.
 
     0.677
AMY53444.1
Hypothetical protein.
       0.671
dhaK
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK.
   
 
 0.619
groL
60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Belongs to the chaperonin (HSP60) family.
 
     0.564
adhT_2
Alcohol dehydrogenase.
 
    0.555
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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