Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mmoXMethane monooxygenase component A alpha chain. (543 aa)    
Predicted Functional Partners:
mmoY
Methane monooxygenase component A beta chain.
 
 
 0.998
mmoC
Methane monooxygenase component C.
 
 
 0.994
AMY53447.1
Hypothetical protein.
 
  
 0.992
adhT_2
Alcohol dehydrogenase.
 
  
  0.958
acoR_2
Acetoin dehydrogenase operon transcriptional activator AcoR.
 
   
 0.860
AMY54039.1
Hypothetical protein.
 
     0.754
AMY54038.1
Hypothetical protein.
 
     0.741
groL
60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Belongs to the chaperonin (HSP60) family.
 
   
 0.612
algB
Alginate biosynthesis transcriptional regulatory protein AlgB.
 
   
 0.527
AMY52457.1
Hypothetical protein.
  
     0.525
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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