Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY53460.1Putative zinc-binding alcohol dehydrogenase. (382 aa)    
Predicted Functional Partners:
AMY53459.1
Hypothetical protein.
 
     0.938
AMY53458.1
Hypothetical protein.
 
     0.811
ydbD
Putative manganese catalase.
 
  
 0.608
AMY53461.1
Hypothetical protein.
 
     0.518
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
 
  
 0.470
yghA_2
Putative oxidoreductase YghA.
 
  
 0.456
AMY53462.1
Sepiapterin reductase.
       0.440
yghA_1
Putative oxidoreductase YghA.
 
  
 0.434
AMY54169.1
Hypothetical protein.
 
     0.432
AMY52661.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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