Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lcfB_3Long-chain-fatty-acid--CoA ligase. (496 aa)    
Predicted Functional Partners:
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 
 0.930
mas
Mycocerosic acid synthase.
  
 0.898
AMY55231.1
Long-chain-fatty-acid--CoA ligase FadD15.
 
 
0.868
AMY54499.1
Long-chain-fatty-acid--CoA ligase FadD15.
 
 
0.866
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
 
 0.858
lcfB_1
Long-chain-fatty-acid--CoA ligase.
  
  
 
0.844
accD6
Putative propionyl-CoA carboxylase beta chain 6.
  
 0.837
accC_1
Biotin carboxylase.
  
 
 0.822
accC_2
Biotin carboxylase.
  
 
 0.822
ytpA_1
Phospholipase YtpA.
    
  0.815
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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