Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mhqRHTH-type transcriptional regulator MhqR. (150 aa)    
Predicted Functional Partners:
AMY53502.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
  
    0.586
accA1_1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
       0.584
acdA_6
Acyl-CoA dehydrogenase.
  
    0.581
citE
Citrate lyase subunit beta-like protein; Belongs to the HpcH/HpaI aldolase family.
       0.578
paaZ_1
Bifunctional protein PaaZ.
       0.578
pmfR
Transcriptional activator PmfR.
  
    0.488
AMY52800.1
Hypothetical protein.
  
     0.439
kstR2_4
HTH-type transcriptional repressor KstR2.
       0.415
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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