Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY53510.1Hypothetical protein. (377 aa)    
Predicted Functional Partners:
mhpA
3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase.
 
   
 0.970
AMY53509.1
Ureidoglycolate lyase.
 
  
 0.967
AMY53511.1
Hypothetical protein.
 
     0.896
AMY52671.1
Hypothetical protein.
 
     0.800
bphC2
Biphenyl-2,3-diol 1,2-dioxygenase 2.
 
  
 0.783
fabG_10
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
AMY52682.1
Ureidoglycolate lyase.
 
  
 0.737
tfdB
2,4-dichlorophenol 6-monooxygenase.
 
   
 0.639
AMY51815.1
2,6-dihydropseudooxynicotine hydrolase; Belongs to the UPF0255 family.
  
     0.552
AMY52670.1
Cytochrome p450 CYP199A2.
 
   
 0.519
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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