Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53515.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
ophA1_2
Phthalate dioxygenase reductase.
 
     0.820
AMY53513.1
Baeyer-Villiger monooxygenase.
 
     0.788
ephD_5
Putative oxidoreductase EphD; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.754
AMY52473.1
Hypothetical protein.
 
     0.708
ephD_4
Putative oxidoreductase EphD.
 
     0.686
ephD_3
Putative oxidoreductase EphD.
 
     0.604
fadR_2
Fatty acid metabolism regulator protein.
  
     0.550
AMY53516.1
Putative HTH-type transcriptional regulator.
       0.544
yfiY_4
Putative siderophore-binding lipoprotein YfiY.
       0.530
yqjH_3
NADPH-dependent ferric-chelate reductase.
       0.520
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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