Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY53516.1Putative HTH-type transcriptional regulator. (197 aa)    
Predicted Functional Partners:
yfiY_4
Putative siderophore-binding lipoprotein YfiY.
       0.752
yqjH_3
NADPH-dependent ferric-chelate reductase.
       0.736
AMY54858.1
Hypothetical protein.
  
     0.631
AMY52564.1
Hypothetical protein.
  
     0.618
ephD_5
Putative oxidoreductase EphD; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.588
ophA1_2
Phthalate dioxygenase reductase.
  
  
 0.556
AMY53515.1
Hypothetical protein.
       0.544
AMY54064.1
Hypothetical protein.
 
    0.541
AMY53513.1
Baeyer-Villiger monooxygenase.
       0.523
AMY54672.1
Putative cytochrome P450 136.
 
   
 0.495
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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