Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yfiY_4Putative siderophore-binding lipoprotein YfiY. (348 aa)    
Predicted Functional Partners:
yusV_2
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.864
yusV_1
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.858
yfmC_3
Fe(3+)-citrate-binding protein YfmC.
  
  
 0.780
yqjH_3
NADPH-dependent ferric-chelate reductase.
  
  
 0.779
yfiY_2
Putative siderophore-binding lipoprotein YfiY.
  
  
 0.775
yfmC_5
Fe(3+)-citrate-binding protein YfmC.
  
  
 0.770
yfiY_8
Putative siderophore-binding lipoprotein YfiY.
  
     0.768
AMY53516.1
Putative HTH-type transcriptional regulator.
       0.752
yhfQ_2
Putative ABC transporter substrate-binding lipoprotein YhfQ.
  
  
 0.750
yhfQ_1
Putative ABC transporter substrate-binding lipoprotein YhfQ.
  
  
 0.749
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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