Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53530.1Hypothetical protein. (456 aa)    
Predicted Functional Partners:
accD3_2
Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
 
   
 0.831
yfdE_1
Acetyl-CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family.
       0.732
lutR_3
HTH-type transcriptional regulator LutR.
 
    0.689
kipR_3
HTH-type transcriptional regulator KipR.
       0.469
mrpA
Na(+)/H(+) antiporter subunit A.
  
  
 0.458
ycaD
Putative MFS-type transporter YcaD.
  
    0.410
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.407
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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