Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pobAP-hydroxybenzoate hydroxylase. (391 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
 
 0.986
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
 
 0.984
clcA
Chlorocatechol 1,2-dioxygenase.
 
  
 0.801
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.800
lly
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.749
catD
3-oxoadipate enol-lactonase 2.
 
 0.741
AMY52291.1
Hypothetical protein.
 
  
 0.723
kipR_3
HTH-type transcriptional regulator KipR.
 
   
 0.675
npcC
Hydroxyquinol 1,2-dioxygenase.
 
  
 0.663
clpP2_3
ATP-dependent Clp protease proteolytic subunit 2; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
 
 0.662
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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