Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ykfBL-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (367 aa)    
Predicted Functional Partners:
catC
Muconolactone Delta-isomerase.
 
 
 0.985
clcA
Chlorocatechol 1,2-dioxygenase.
 
 
 0.980
hcaR_3
Hca operon transcriptional activator HcaR; Belongs to the LysR transcriptional regulatory family.
 
   
 0.857
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
  
  
 0.649
pobA
P-hydroxybenzoate hydroxylase.
     
 0.500
npcC
Hydroxyquinol 1,2-dioxygenase.
 
  
 0.500
kipR_3
HTH-type transcriptional regulator KipR.
 
   
 0.474
ydcO
Inner membrane protein YdcO.
 
   
 0.424
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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