Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clcAChlorocatechol 1,2-dioxygenase. (288 aa)    
Predicted Functional Partners:
ykfB
L-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.980
catC
Muconolactone Delta-isomerase.
 
  
 0.978
tfdB
2,4-dichlorophenol 6-monooxygenase.
  
 
 0.908
pobA
P-hydroxybenzoate hydroxylase.
 
  
 0.801
hcaR_3
Hca operon transcriptional activator HcaR; Belongs to the LysR transcriptional regulatory family.
 
   
 0.764
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.737
catD
3-oxoadipate enol-lactonase 2.
 
  
 0.648
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.572
lly
4-hydroxyphenylpyruvate dioxygenase.
 
   
 0.483
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
  
0.463
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.