Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rsbP_2Phosphoserine phosphatase RsbP. (386 aa)    
Predicted Functional Partners:
rsbW_2
Serine-protein kinase RsbW.
 
 
 0.956
AMY55523.1
Hypothetical protein.
 
  
 0.938
rsbQ
Sigma factor SigB regulation protein RsbQ.
 
    0.906
rsbW_1
Serine-protein kinase RsbW.
 
 
 0.739
rsfB_3
Anti-sigma-F factor antagonist RsfB; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.678
todS
Sensor histidine kinase TodS.
 
  
 0.665
rsfB_2
Anti-sigma-F factor antagonist RsfB; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.614
fbiC
FO synthase.
   
    0.607
rsfB_4
Anti-sigma-F factor antagonist RsfB; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.600
rsfB_1
Anti-sigma-F factor antagonist RsfB; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.598
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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