Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53545.1Hypothetical protein. (443 aa)    
Predicted Functional Partners:
mlaE_2
Putative phospholipid ABC transporter permease protein MlaE.
 
 0.995
mkl
Putative ribonucleotide transport ATP-binding protein mkl.
 
 0.989
mlaE_1
Putative phospholipid ABC transporter permease protein MlaE.
 
 0.985
AMY54253.1
Hypothetical protein.
 
 
 0.974
AMY54252.1
Hypothetical protein.
 
 
 0.972
AMY54255.1
Hypothetical protein.
 
 
0.902
AMY54254.1
Hypothetical protein.
 
 
0.899
AMY54257.1
Hypothetical protein.
 
  
 0.771
AMY54258.1
Hypothetical protein.
 
  
 0.735
AMY55689.1
Hypothetical protein.
  
 
 
 0.730
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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