Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
paaKPhenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (435 aa)    
Predicted Functional Partners:
paaD
Putative 1,2-phenylacetyl-CoA epoxidase, subunit D.
 
  
 0.995
paaC
1,2-phenylacetyl-CoA epoxidase, subunit C.
 
 
 0.995
paaB
1,2-phenylacetyl-CoA epoxidase, subunit B.
 
 
 0.993
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
 
 
 0.992
paaA
1,2-phenylacetyl-CoA epoxidase, subunit A.
 
 
 0.992
paaI
Acyl-coenzyme A thioesterase PaaI.
 
 
 0.987
AMY52708.1
Putative aldehyde dehydrogenase.
  
 0.934
styD
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.934
gatA_2
Glutamyl-tRNA(Gln) amidotransferase subunit A.
    
 0.906
nylA
6-aminohexanoate-cyclic-dimer hydrolase; Belongs to the amidase family.
    
 0.906
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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