Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
crt_1Short-chain-enoyl-CoA hydratase. (240 aa)    
Predicted Functional Partners:
hbd_2
3-hydroxybutyryl-CoA dehydrogenase.
 0.975
paaJ_1
3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.922
paaG_1
1,2-epoxyphenylacetyl-CoA isomerase.
 
   
0.870
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.827
acdA_1
Acyl-CoA dehydrogenase.
  
 0.812
acdA_2
Acyl-CoA dehydrogenase.
  
 0.812
fadB2_1
3-hydroxybutyryl-CoA dehydrogenase.
 0.812
fadB2_2
3-hydroxybutyryl-CoA dehydrogenase.
 0.775
paaZ_2
Bifunctional protein PaaZ.
  
 0.764
AMY55523.1
Hypothetical protein.
  
 0.759
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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