Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY53574.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
paaZ_2
Bifunctional protein PaaZ.
       0.879
paaI
Acyl-coenzyme A thioesterase PaaI.
       0.879
cdaR_3
Carbohydrate diacid regulator.
       0.671
kstR2_5
HTH-type transcriptional repressor KstR2.
 
     0.638
crt_1
Short-chain-enoyl-CoA hydratase.
       0.485
hbd_2
3-hydroxybutyryl-CoA dehydrogenase.
       0.449
paaG_1
1,2-epoxyphenylacetyl-CoA isomerase.
       0.433
paaJ_1
3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.413
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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