Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
adhAPutative formaldehyde dehydrogenase AdhA. (308 aa)    
Predicted Functional Partners:
qorA_2
Quinone oxidoreductase 1.
  
     0.759
qorA_3
Quinone oxidoreductase 1.
  
     0.641
yfmJ_3
Putative NADP-dependent oxidoreductase YfmJ.
 
 
 0.588
yfmJ_1
Putative NADP-dependent oxidoreductase YfmJ.
 
 
 0.557
AMY53581.1
Putative HTH-type transcriptional regulator.
     
 0.537
yfmJ_2
Putative NADP-dependent oxidoreductase YfmJ.
 
 
 0.536
AMY53582.1
Hypothetical protein.
       0.526
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
 
 0.496
benM
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
       0.493
AMY54516.1
2-haloacrylate reductase.
  
     0.466
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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